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BioWorks Inc turbosequest algorithm bioworks 3.1
Turbosequest Algorithm Bioworks 3.1, supplied by BioWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/turbosequest+algorithm/turbosequest+bioworks+browser+3+2/pmc04932838-140-9-14
Average 90 stars, based on 1 article reviews
turbosequest algorithm bioworks 3.1 - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Proteomic profiling of cereal aphid saliva reveals both ubiquitous and adaptive secreted proteins.
Article Snippet: Protein identification from the MS/MS data was performed using the TurboSEQUEST [21] algorithm in BioWorks v. 3.2 (Thermo Fisher Scientific) to correlate the data against ACYPIproteins v2.1, the official protein set of the pea aphid genome assembly (33291 predicted protein models; accessed November 2011) available at http://www.aphidbase.com/aphidbase/downloads.

Tandem Mass Spectroscopy:

Article Title: Multistage mass spectrometric analysis of human hemoglobin glutathionylation: correlation with cigarette smoking.
Article Snippet: Protein glutathionylation is an important protein post-translational modification associated with oxidative stress, in which the thiol groups of cysteine residues react with glutathione and form disulfide bonds.. Glutathionylation has been shown to affect protein structure and modulate protein function, and is implicated in the regulation of signaling and metabolic pathways.. Glutathionylation of human hemoglobin has been known for decades.

Article Title: Structural and biochemical characterization of O-mannose-linked human natural killer-1 glycan expressed on phosphacan in developing mouse brains.
Article Snippet: .. The spectra data obtained by MS/MS were subjected to database search analysis with the TurboSEQUEST algorithm (BioWorks; Thermo Fisher Scientific) using the NCBInr database. ..

Sequencing:

Article Title: Mapping Glycans onto Specific N-Linked Glycosylation Sites of Pyrus Communis PGIP Redefines the Interface for EPG:PGIP Interactions
Article Snippet: .. Data Analysis The resulting data was searched against a database containing the polygalacturonase-inhibiting protein (PGIP, gi|33087512 and Pyrus communis ) fasta sequence, obtained from NCBI, and the common contaminants database (ThermoFisher) using the TurboSequest algorithm (BioWorks 3.1, Thermo Fisher Scientific Inc.). .. One-dimensional LC-MS/MS analysis was performed on a linear ion trap mass spectrometer (LTQ, Thermo Fisher Scientific Inc., San Jose, CA) equipped with a nanoelectrospray ion source.

Article Title: RACK1/Asc1p, a Ribosomal Node in Cellular Signaling
Article Snippet: The MS2 spectra with a total ion current higher than 10,000 were used to search for matches against a yeast genome protein sequence database from the National Center for Biotechnology Information (NCBI) Saccharomyces Genome Database (SGD) (Stanford, CA; March 2005, 6882 sequences, plus 180 sequences of the most commonly appearing contaminants such as keratins and proteases, provided with the BioworksBrowser package) using the TurboSEQUEST algorithm ( 39 ) of the Bioworks software. .. The MS2 spectra with a total ion current higher than 10,000 were used to search for matches against a yeast genome protein sequence database from the National Center for Biotechnology Information (NCBI) Saccharomyces Genome Database (SGD) (Stanford, CA; March 2005, 6882 sequences, plus 180 sequences of the most commonly appearing contaminants such as keratins and proteases, provided with the BioworksBrowser package) using the TurboSEQUEST algorithm ( 39 ) of the Bioworks software. ..

Quantitative Proteomics:

Article Title: Vesicular trafficking and stress response coupled to PI3K inhibition by LY294002 as revealed by proteomic and cell biological analysis.
Article Snippet: .. Protein identification and label-free quantification The triplicate raw files containing the MS and MSMS data for each biological sample were searched using the TurboSEQUEST algorithm of the Bioworks Browser 3.2 EF2 (Thermo) software as described previously.18 Cysteine carbamidomethylation and methionine oxidation were included in the search criteria. ..

Article Title: Vesicular trafficking and stress response coupled to PI3K inhibition by LY294002 as revealed by proteomic and cell biological analysis
Article Snippet: .. Protein identification and label-free quantification The triplicate raw files containing the MS and MSMS data for each biological sample were searched using the TurboSEQUEST algorithm of the Bioworks Browser 3.2 EF2 (Thermo) software as described previously. ..

Mass Spectrometry:

Article Title: Vesicular trafficking and stress response coupled to PI3K inhibition by LY294002 as revealed by proteomic and cell biological analysis
Article Snippet: .. Protein identification and label-free quantification The triplicate raw files containing the MS and MSMS data for each biological sample were searched using the TurboSEQUEST algorithm of the Bioworks Browser 3.2 EF2 (Thermo) software as described previously. ..



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